Harshil Patel
Harshil Patel
This is probably tiny enough that it doesn't warrant needing a subworkflow 😅 Having said that, have you seen this PR to nf-core/fetchngs? This might help here. Could imagine porting...
Hi @tetedange13 ! This is an interesting approach. So if I understand correctly, rather than creating a subsetted Kraken database we would provide a full-fledged one and provide the taxonomy...
This is indeed awesome!! 🤩 When this is out in a release, we will first need to bump the minimum version of NF on nf-core/modules as well as in pipeline...
Hi @andrebolerbarros ! Did @MatthiasZepper suggestions work for you? I will close this issue because it seems to be an issue getting the pipeline to run and you will be...
Patching samtools sort process behaviour when samtools sort resorts to using on-disk temporary files
Hi @koustav-pal ! Thanks for the PR! Can you provide me an example of the stdout/ Nextflow log file when there is a failure here please? Is it a silent...
Patching samtools sort process behaviour when samtools sort resorts to using on-disk temporary files
Closing for now. Please feel free to re-open with a fix as suggested above. Be great to have a little more info on the failure and access to the logs...
Agree. Nextflow is inherently only resumable at the run-level and not across multiple runs. If you want to store assets more longer term then most pipelines will have parameters like...
Waiting for v2.15.0 where nf-validation will be replaced by nf-schema in the pipeline template. Will convert to draft for now.
Yep, I agree. Most users will want to know what the coverage looks like based on the strandedness of the gene itself. We could have an implementation in the pipeline...
Seems to be a duplicate of https://github.com/nf-core/rnaseq/issues/1288