Harshil Patel

Still haven't had time to look into adding `ffq` properly I'm afraid 😏 Going to get a maintenance release out in the next couple of days. We can maybe assess...

Yep, this would be really nice. Using `NO_FILE` as suggested [here](https://github.com/nextflow-io/patterns/blob/master/docs/optional-input.adoc) doesn't work for optional inputs on AWS as @apeltzer found. Another solution is to have a dummy file in...

I haven't I'm afraid. I have resorted to staging "dummy" files to bypass this. See discussion [here](https://github.com/nf-core/modules/pull/130#issuecomment-770729069). Maybe there is a better solution.

Bump. Might be worth giving it another shot to see if it works again with the latest edge release @grst @mahesh-panchal

Yep, some of that syntax can be improved due to recent additions to NF (e.g. https://github.com/nextflow-io/nextflow/issues/2700) but it is really a side-effect of truly modularising within and between pipelines. I...

> it would still be the older conda-forge version that gets installed This could be overcome by pinning the channel but I agree it could be an issue if not...

If we need multiple tools in the same container the place to add it would be [BioContainers/multi-package-containers](https://github.com/BioContainers/multi-package-containers) as opposed to [BioContainers/mulled](https://github.com/BioContainers/mulled). This is what I meant by adding a mulled...

Hi @chbk ! We are about to release a much updated version of the pipeline that has been completely refactored to be written in Nextflow DSL2. When this is released,...

Hi @chbk ! Thanks for reporting and apologies for the delay in responding! We are about to release a much updated version of the pipeline that has been completely refactored...

Hi @J8git ! Thanks for reporting! We are about to release a much updated version of the pipeline that has been completely refactored to be written in Nextflow DSL2. When...