Turn sample processing into a subworkflow

Open edmundmiller opened this issue 2 years ago • 1 comments

https://github.com/nf-core/rnaseq/blob/29f8b393fc979beff9a88a2b37fcb6cb1d4ee994/workflows/rnaseq.nf#L192-L235

I'd love if we could move this to a nf-core subworkflow, so I can just nf-core subworkflows update it in nascent...

I'd be happy to make it happen, just want to get buy-in first.

Aug 22 '23 20:08 edmundmiller

This is probably tiny enough that it doesn't warrant needing a subworkflow 😅 Having said that, have you seen this PR to nf-core/fetchngs? This might help here. Could imagine porting this to a nf_core_rnaseq_utils subworkflow that can be shared.

https://github.com/nf-core/fetchngs/pull/213/files

Oct 15 '23 11:10 drpatelh