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Zeiss CZI: Initialisation failure due to 'Invalid C index'

Open dgault opened this issue 2 years ago • 1 comments

Issue was raised via QA-32932 and a sample file was provided that reproduces the issue with Bio-Formats 6.13.0

When attempting to open the file it fails during initialisation and the following stack trace is seen:

Exception in thread "main" java.lang.IllegalArgumentException: Invalid C index: 1/1
	at loci.formats.FormatTools.getIndex(FormatTools.java:481)
	at loci.formats.FormatTools.getIndex(FormatTools.java:408)
	at loci.formats.FormatReader.getIndex(FormatReader.java:1150)
	at loci.formats.in.ZeissCZIReader.assignPlaneIndices(ZeissCZIReader.java:2181)
	at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:1002)
	at loci.formats.FormatReader.setId(FormatReader.java:1466)
	at loci.formats.ImageReader.setId(ImageReader.java:863)

dgault avatar May 02 '23 14:05 dgault

Another QA from UoD/Nightshade user: QA 42439

dominikl avatar Jan 15 '25 13:01 dominikl