bioformats icon indicating copy to clipboard operation
bioformats copied to clipboard

Published 20 hours ago • verified publisher icon ome

ND2: Inverted LUT for RGB images

Open dgault opened this issue 3 years ago • 6 comments

Issue was raised on forum thread https://forum.image.sc/t/nd2-rgb-import-issue/60901 and a sample file reproducing the issue is available on Zenodo - https://zenodo.org/record/5772393#.YbNTrPnP1Zc

When the ND2 file is opened using Bio-Formats 6.8.0 and Composite mode via the FIJI plugin the resulting image does not match the colour seen when importing into NIS Elements Viewer

dgault avatar Jan 12 '22 17:01 dgault

This issue has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/nd2-rgb-import-issue/60901/7

imagesc-bot avatar Jan 12 '22 17:01 imagesc-bot

This issue has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/nd2-file-opening-up-as-greyscale-instead-of-correct-colors-in-fiji/88960/5

imagesc-bot avatar Nov 22 '23 17:11 imagesc-bot

An additional report of this issue has been received on forum thread https://forum.image.sc/t/nd2-file-opening-up-as-greyscale-instead-of-correct-colors-in-fiji/88960/5

A sample file reproducing the issue is available at https://zenodo.org/records/10277961?token=eyJhbGciOiJIUzUxMiJ9.eyJpZCI6Ijg4YTBkZmZmLTA4ZDctNDFlZi04Mzk5LWQ0YTMwOGE3MzE4ZCIsImRhdGEiOnt9LCJyYW5kb20iOiIzZTA4ZjI2ZDc3N2U5YzBkNzQ3NjhiNDVhNzEzMzBjOSJ9.Vw5Cqek98Sacs87fKlJKujS0o4qP1wt8g7vV4FercXLOa1NoDb8ASdnwFJucMn2B9SH0ywBrs-QKnkOALJKqOA

I was able to reproduce the same issue reported by the user using Bio-Formats 7.0.1 with the image colors showing incorrectly

dgault avatar Dec 07 '23 14:12 dgault

This issue has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/nd2-file-opening-up-as-greyscale-instead-of-correct-colors-in-fiji/88960/7

imagesc-bot avatar Dec 07 '23 14:12 imagesc-bot