deepTools
deepTools copied to clipboard
deeptools
Tools to process and analyze deep sequencing data.
## Pre-check **Welcome to deepTools GitHub repository! Before opening the issue please check that the following requirements are met:** - [x] Search whether this issue (or a similar issue) has...
Hi, @daler If converting bam for sashimiplot RNA-seq of alternative splicing to bigwig, should normalization be used, and if so, which one?
Hi, Dear team members, I am trying to use scaling method in computaMatrix to plot PRO-seq signal from TSS to TES. However, the signal in the gene body(which is the...
``` Python 3.9.12 deeptools 3.5.1 alignmentSieve 3.5.1 ``` ******* Dear all, when I run `alignmentSieve` with `ATACshift` option, but not for all my samples, I get as output a truncated...
Sorry this is just a question but is it possible to use only the read ends in bamCoverage?
**Welcome to deepTools GitHub repository! Please check the following regarding your pull request :** - [ ] Does the PR contain new feature? - [ ] Does the PR contain...
I want to know samtools flag used in bamPEFragment.
I have a clarification question. I have two BW files representing signal tracks of my control and treatment samples, and a bedfile containing my region of interest. Could I use...
**Welcome to deepTools GitHub repository! Before opening the issue please check that the following requirements are met :** - [x] Search whether this issue (or a similar issue) has been...
