deepTools
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deeptools
Tools to process and analyze deep sequencing data.
**Welcome to deepTools GitHub repository! Please check the following regarding your pull request :** - [ ] Does the PR contain new feature? - [ ] Does the PR contain...
Found another conflict about numpy version. computeMatrixOperations.py line 430 has `np.warnings`, which is not an attribute of numpy 2.2. By removing `np.` and add `import warnings`, the rest code executed...
**Welcome to deepTools GitHub repository! Before opening the issue please check that the following requirements are met :** - [ ] Search whether this issue (or a similar issue) has...
Deeptools 3.5.6 I think it would be very useful to have a `--autoscale 'on'` feature in tools like `plotHeatmap`, which would do something like calculate the min and max values...
I'm trying to generate enrichments from different bigwig files for TSS (-100,+500) and gene body (+500, end) for certain TFs using TSS and body coordinates from the same genes ordered...
Dear Deeptools authors, I'm looking for some advice. I'm looking to plot a heatmap similar to panel D in this figure: https://ars.els-cdn.com/content/image/1-s2.0-S2211124720302989-gr1_lrg.jpg The signal on the top panel (the “grey...
Hi, I found that alignmentSieve in deepTools v3.5.6 creates too many tmp files. I don't know if this is specific to my environment, but I report it here as a...
Updated the description of GC bias in sequencing to clarify the preference of DNA polymerases for GC-moderate regions instead of GC-rich regions. **Welcome to deepTools GitHub repository! Please check the...
- allows the division, subtraction, or addition of two matrices given their sizes are coherent - allows averaging across matrices - Please test before accepting.
