Daniel Dimitrov

Hi @yjgeno, An example would be: `liana_wrap(seurat_object, method="logfc", liana_pipe.parms=list(test.type="t))` However, currently logfc won't return p-values. So, it would be in vain. I am working on a large LIANA update, and...

Hi @yjgeno, For the internal (default) methods of LIANA, if you set `expr_prop` to 0 then all interactions will be returned.

Hi @austinv11, Currently, comparisons between conditions are not implemented in LIANA, but it is a planned extension that I hope to implement soon. Also, as far as I'm aware, [CrossTalkeR](https://github.com/CostaLab/CrossTalkeR)...

Hi @EJCresswell, I have now implemented 2 ways of doing between condition comparisons, but we are still testing them. We really want to understand how to best approach this before...

Hey @austinv11 and @EJCresswell, I created a draft tutorial for the integration of LIANA /w [tensor-cell2cell](https://www.nature.com/articles/s41467-022-31369-2). The tutorial is still preliminary as we want to extend it a bit, and...

Hi @EJCresswell please try this command: `remotes::install_github("saezlab/liana", ref="dev")` :)

@EJCresswell Odd... I assume you should have .sh even on Windows - unless it's a very old version? I assume you just need to install to prevent the error: https://cran.r-project.org/bin/windows/Rtools/rtools40.html...

Depending on which R version you have: https://cran.r-project.org/bin/windows/Rtools/

If this is the issue you should also see `RTools (...) is not currently installed` in the R terminal output as the package installs

OK. Odd... Works just fine on my end (`liana_bysample` is just a loop that calls `liana_wrap`). Could you please restart your r_session? Just to make sure it's not some other...