Daniel Dimitrov
Daniel Dimitrov
Hi @hemadelon, Thanks a lot for the feedback. I will make sure we exclude this interaction in subsequent versions. And I will also double check other interactions coming from this...
Hi @nsdelablancac, Likely the way the data was normalized might contains some negative counts etc. I would double check that. Please feel free to open another issue if the problems...
Hey @reneemoerkens, It seems that perhaps the (automatic) environment was not set up properly, as scipy is one of the main libraries. You could instead set it up manually and...
Hi @Qirongmao97, What type of spatial experiment would you like to analyse? Note that the default approach to combine liana and tensor requires cell clusters. So, your application might depend...
@earmingol this seems like a custom exception. Any suggestions? @alvarezprado I assume it's something to do with the naming of the columns that you're passing? Maybe the scores that you...
Hi @alvarezprado, it could be that the resource is not formatted correctly and somehow it seems to affect the dimensions of your data? You could also use liana's internal mouse...
Hi @redst4r, thanks for the PR. I will merge it soon :)
Hi @anke-king, Can you please show the `adata.var` of your data and how do you specify the resource which liana is using (e.g. via `resource_name`)?
Hi @anke-king, If you can share a subset of your data and the function you were using from liana, I can debug it on my end. Daniel
Hi @Wulei26, likely you need to pass `use_raw = False` :)