Daniel Dimitrov

You can also skip it if you run: `context_df_dict

Hi @EJCresswell, But does it work with the example data? Sharing your session_info() would allow me to attempt to traceback the issue :) Also, if it works with the example,...

Please note that I have now moved these changes to the `dev` branch and updated my comments respectively.

Hi @JanLeipzig, > I'm very interested in the "non-peptidic molecules Indeed that's a good point. I have actually written a version of LIANA specifically for metabolite-receptor interactions, inspired by [MEBOCOST](https://www.biorxiv.org/content/10.1101/2022.05.30.494067v1.abstract)....

@deeenes I assume updating to CellPhoneDBv4 should be just a matter of changing the source url to https://github.com/ventolab/CellphoneDB-data in pypath Also, if I remember correctly from Luz, they have now...

Hi @claratejido, If you're still experiencing the issue - maybe @deeenes could help. As this seems to be an issue with retrieving the orthology symbols for the conversion.

@deeenes also please use the `is_ppi` flag, I found a lot of erroneous interactions between enzymes and receptors. (no metabolite)

Maybe how I process it here would help: https://github.com/saezlab/liana-py/issues/60

@Nic-Nic thanks Nico. Though I would say the `is_ppi` is crucial since there are now a lot of enzyme-enzyme interactions imported ad ligand-receptors 😅

I renamed the issue and reopened since the two comments are tied. The flag was introduced along with the update of the database. 🙂