Daniel Dimitrov
Daniel Dimitrov
Hi @anke-king, Is it possible that you have unexpected values in the anndara object? For example, zeroes or nan?
@anke-king apologies I meant negative values, not zeroes.
Hi @anke-king, notice that in the tutorial I use the log-normalized counts, not the scaled ones :)
Hi @anke-king, You can share a reprex and I can test it on my end. Best if I get a subset of your data and the code relevant for running...
Hi @nrclaudio, Thanks. I will make sure to check for this :)
Hi @maximelepetit, Thanks for opening an issue! I've been considering implementing one of the two to liana-py. I will do my best to have at least one implemented soon. In...
Hi @maximelepetit, Thanks a lot for all your suggestions! I will pin the issue and will keep it open until I have some of those in place. I plan to...
Hi @brainfo, thanks for the suggestion. I'm still working on refactoring the algorithmic side of liana, but once I'm done with that. I will refactor the functions and extend them...
Hi @brainfo, TBH, I realize that I should provide a bit more visualisations, so suggestions are welcome. Please feel free to open an issue with your suggestions, and I will...
Hi @nicolebussola, Thanks for using LIANA :) I assume the error that you're getting has to do with the data that you are passing being a view rather than a...