Daniel Straub

I have added the new parameter but I have not added a test due to the apparently insufficient test data.

Alright, then we keep it as it is. 2.13.0 was just released and includes the `--quality_type` parameter. In case the quality type is still an issue, we can revisit the...

> suggesting that some proportion of host reads in the fastq files are not being removed https://github.com/nf-core/mag/issues/381

I close that as "not planned" for now, but please anyone re-open this in case someone wants to take action here.

I have opened a (draft) PR https://github.com/nf-core/bacass/pull/252 that implements nf-test for all test profiles. Doing so, I came to the (potentially wrong) conclusion that there are only sometimes only very...

In the stablefiles_test.zip seem to be an overlap of 1142 of 1155 total md5sums. That looks amazing. 234 files are not in folder busco. Not sure what to make of...

> Note that this covers only -profile test. Would it be helpful if I computed the md5sum comparisons for the other test profiles as well? I am not entirely sure...

Hi there, with so little information there is no way your problem can be solved. Could you please provide basic information as was requested already when you opened the issue:...

Thanks for the info. Could you please check out the large red warning message shown at the top of https://nf-co.re/bacass/2.4.0? It leads you to https://nf-co.re/advisories/process-shell-configuration that elaborates that the nextflow...

Is that PR still under active development? It appears to me that is stale since a while and maybe could be closed?