Daniel Straub

Ah thanks for linking autocycler, this seems to be very interesting for bacass I think. It seems to be basically Trycycler just faster & easier to build into a pipeline,...

Actually, reading the issue again, there might be several different proposals: (1) produce multiple _assemblies_ in parallel to produce **several** assemblies for each sample and choose manually "the best" assembly...

Thats a handy container. However, nf-core pipelines are supposed to be rather flexible and modularized. Therefore I didnt want to suggest using that exact script but rather as a template...

I would add it into `modules/nf-core`, then either use `nf-core modules patch` to remove the meta map or, probably even easier, just add a fake meta map to the channel...

Imho, re-analysis from scratch of relevant data might be more helpful than attempting to use old methods to make data comparable ("old" doesnt mean here particularly blast, but all steps...

Hi there, I do not oppose the addition but I do want to share my experience: Folder structures are changing over time and deviate between labs, therefore, code that parses...

Unfortunately I am not certain about the error itself, but it does sound like X11 forwarding to me as well. Maybe you can make sure that your pipeline and nextflow...

> I can't use containers in the cluster I'm working with, so I install every requirement previously in a conda environment. I might have to install X11 or something there...

Hi, it seems like everyone missed that issue. Even if you most likely moved on, here > Do these parameters correspond to the columns '%Complete (specific)' and '%Complete and duplicated...

Hi there, looking at the error message, `ValueError: The number of observations cannot be determined on an empty distance matrix.` seems to be important. I assume there were no bins/mags...