nf-core cannot run

[kaokaoshuangyu]

trafficstars

Description of the bug

ERROR ~ Error executing process > 'NFCORE_BACASS:BACASS:FASTQ_TRIM_FASTP_FASTQC:FASTP (r-ERR044595)'

Caused by: Process NFCORE_BACASS:BACASS:FASTQ_TRIM_FASTP_FASTQC:FASTP (r-ERR044595) terminated with an error exit status (126)

Command executed:

[ ! -f r-ERR044595.fastq.gz ] && ln -sf r-ERR044595.fastq.gz

fastp
--in1 r-ERR044595.fastq.gz
--out1 r-ERR044595.fastp.fastq.gz
--thread 6
--json r-ERR044595.fastp.json
--html r-ERR044595.fastp.html



2> >(tee r-ERR044595.fastp.log >&2)

cat <<-END_VERSIONS > versions.yml "NFCORE_BACASS:BACASS:FASTQ_TRIM_FASTP_FASTQC:FASTP": fastp: $(fastp --version 2>&1 | sed -e "s/fastp //g") END_VERSIONS

Command exit status: 126

Command output: (empty)

Command error: .command.run: line 305: .command.run: Permission denied

Work dir: /mnt/00.Mount/001.wangmei/020.naopore_CompletionMap_20250928/work/e7/f74016d6d24a9bb47b3144d84f450f

Tip: you can replicate the issue by changing to the process work dir and entering the command bash .command.run

-- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

-- Check '.nextflow.log' file for details

I found that all the generated .command.sh files are non-executable. Why is that? There is no problem with my file system, as it is /dev/sda on /mnt/00.Mount, type ext4 (rw,relatime,stripe=64).

-rw-rw-r-- 1 wangmei docker 11K Sep 30 12:28 /mnt/00.Mount/001.wangmei/020.naopore_CompletionMap_20250928/work/e7/f74016d6d24a9bb47b3144d84f450f/.command.run

Command used and terminal output

Relevant files

No response

System information

No response