phy
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cortex-lab
phy: interactive visualization and manual spike sorting of large-scale ephys data
Hi all, I installed Phy on MacOS 11, and stumbled into an annoying error. As others might have experienced this problem as well, I thought it could be useful to...
Sometimes as I am curating a session, I find that the amplitude, contamPct, and KSLabel columns of the ClusterView go blank and their corresponding entries in clust_info.tsv go away too....
Hi. I'm implementing a sorting algorithm in phy to classify the neurons identified by kilosort 2.5. In a first step, I just analyze the clusters identified as "good" by kilosort...
I have found sometimes that a cluster is assigned with best channel a channel that doesn't have the spike. For example in this case, I have a cluster assigned with...
Hi everyone, I am using SpikeInterface to sort spikes from my 16 channel recordings (200µm space between contact). I've configured my probe file in order to have one channel per...
Hi, I just installed phy on a new computer according to the guidelines. The cluster list appears, but all other visualization windows stay empty when a cluster is selected. (See...
 Some of the features are not displayed. What should I check?
System: Ubuntu 20.04 dataset on a SATA-connected 4TB SSD nvidia quadro GPU 32GB RAM Steps to reproduce the problem: Open phy2, select a unit, hit space Full error log: ```...
Hi, I'm not sure if this is the right place to issue this as the issue arises when trying to prepare kilosort/phy output for the IBL pipeline as described [here](https://github.com/int-brain-lab/iblapps/wiki/4.-Preparing-data-for-ephys-GUI)....
Hi, I wonder whether there is a fast way to get the total number of clusters after some filtering. What I'm doing now is writing a line of code in...
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phy: interactive visualization and manual spike sorting of large-scale ephys data