phy

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spyder 5.1.5 requires pyqt5<5.13

6

I've been using phy for a while but we recently had to rebuild our server and I am re-installing everything. When I run pip install phy --pre --upgrade I eventually...

mariehemelt

cluster view and similarity view not shown

4

Hello I am trying to use phy in the Mac mini with Big Sur as OS. I installed identical dependencies to the current Mac in another Mac, in which phy...

sbyoo

Blank ClusterView and SimilarityView

5

Hi, I got some problem to start with a template-gui on my kilosort result. The ClusterView and SimilarityView didn't show anything. No mater how long I wait, it didn't change...

AntonioST

ClusterView problem

2

Hello, we have a similar problem like issue #1151 but with some interesting differences. We use a neuropixels probe and kilosort3. When we run phy on the output of kilosort...

churanj

I'm implementing phyllum, a plugin on phy to automatically analyze neuropixel recordings in the cerebellum. This plugin computes for each cluster several metrics (more than 50), which are plotted on...

FranciscoNaveros

In the middle of manual clustering, no noticable problems. Suddenly, without any discernable action or reason (that I noticed at least), got the below error when selecting any cluster. Worked...

reinderdorman

Waveform view does not rescale when i toggle between waveform types

5

Hi - I find the waveform view to be very helpful and as I curate my data, I like to toggle between the waveforms, the average and the template. Unfortunately,...

boydmeredith

After implementing the custom_similarity plugin in the Kwik-gui, the mean waveforms in the waveform view are displayed as straight lines or, depending how I close the gui or delete the...

Artemissy

Trouble opening .pkl file

1

Hello and thank you all. I'm trying to examine this pkl file created by Phy but get this error: ``` --------------------------------------------------------------------------- UnpicklingError Traceback (most recent call last) Input In [121],...

phanhuynh

Clusters in Waveform View Unaligned

2

I identified all of the good clusters in a data set, partially by using the WaveformView to to identify clusters with clean consistent waveforms. However, just as I started merging...

pcpollak