RATTLE
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comprna
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
After the clustering stage, the output given was "20623 gene clusters found". After taking the clusters.out file and moving through the correction stage, 8074 clusters were left in the consensi.fq...
I installed RATTLE followed the guide on Github but cannot call ./rattle and I cannot find any file named rattle in RATTLE directory. Is there anything wrong with my installation...
Dear developers, Many thanks for such a great tool! I have 32 fastq files sequenced from direct cDNA sequencing by nanopore, and compressed them into a fastq.gz file. When running...
I ran rattle correct on my input files through snakemake. I get an error message saying this: Error in rule cluster_correction: jobid: 13 input: data/.../.../samplefile.fastq output: data/RATTLE_out/samplefile/corrected.fq, data/RATTLE_out/samplefile/uncorrected.fq, data/RATTLE_out/samplefile/consensi.fq log:...
Hi, I'm attempting to use rattle on multiple fastq files from cDNA (actually, the files come from a bam file back-converted into a fastq using bedtools bamToFastq, as I'm interested...
Hi, thanks for developing the tool. As title, when running the rattle cluster it return Segmentation fault (core dumped). This is the code. >rattle/rattle cluster -i ~/Analysis/data/process/rna1/rna1.filter.fastq.gz -o ~/Analysis/tool/isoform_detection/rat/ --iso...
Hello, I have sequences of RNAseq generated using both nanopore and illumina, I want to know if it is possible to give in input to RATTLE both sets? Thanks
Hi, I would like to use clustering that's come from another source, and just use RATTLE for the error correction and polishing. Is this possible? If so, what format and...
I'm experiencing an Illegal instruction error when attempting to run RATTLE correct. The error is consistent when using different fastq files with the only difference being the number of reads...
Hello, I am trying to run rattle correct on the toyset and it gets stuck at around 9% then i get the following message: `terminate called after throwing an instance...
