RATTLE
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comprna
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Hello, I attempted to run clustering of reads on my fasta reads, but it terminates after a few minutes of starting. ```Reading fasta file... Done terminate called after throwing an...
Hi, Is there a sensible way to combine IsoSeq flnc reads and predicted transcripts from an older genome annotation using RATTLE? I expect that the ISoSeq dataset will contain transcripts...
Memory issue
Hi, I am trying to cluster some ONT cDNA data using RATTLE however I am getting the following error: ``` terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc...
Hi! I try to run RATTLE with my fastq reads (direct RNA sequencing): `./rattle cluster -i my.fastq -t 24 --fastq --iso --rna -r 5 ` I got an error: what():...
Hi, I am trying to run RATTLE on my not data from direct cDNA sequencing, but it is returning the error "Segmentation fault (core dumped)" when I use the fq...
Hi, I have a question: firstly, I have already run correct step using the default parameter --min-reads is 5, and it will correct reads with reads support above 5. While...
How can i visualise my read clusters. Eg in a graph or scatter plot
Hello, I wanted to ask if there will be a version of the project that is compatible with the Apple M1 CPU? Best regards, and thanks! 
I need to compile with the libraries statically linked, specially libm.so.6 and libstdc++.so. It's compiled on Ubuntu 20.04 but I want to run it also on RockyLinux 8.9 but it...
