Chris Wyatt
Chris Wyatt
Hi, I am really excited to try out this set of tools, and want to do it through Docker. However, I cannot get the example data to work, I guess...
### Is your feature request related to a problem? Please describe https://nf-co.re/docs/contributing/tutorials/dsl2_modules_tutorial Current document shows old practises : e.g. ``` // Import generic module functions include { initOptions; saveFiles; getSoftwareName...
Contributes to #2154 cardinality was wrong for the `MALT_BUILD` test (needs 5 inputs), have changed this to what I feel is the default (see below), and run nf-core modules test,...
## PR checklist Contributes to #2154 - cardinality was wrong for the test, have changed this, and run nf-core modules test, and there are no failed jobs.
Hey, I need a dataset to run orthology software (orthofinder primarily). It could be for example, ~10 species with ~50 genes of a particular gene family (say 10 mammal species...
Normally the little icon to top right you can visualise the HTML code. Useful for the Multiqc exercise in rnaseq section. Maybe we need to add a specific Gitpod extension...
Idea for improvements from Training 27-29th September 2022 1. Add dsl v1 section for explanation of poison pill. e.g. channel.view() vs println(channel), should run -dsl1 to the nextflow command so...
E.g. Use of a parameter in rnaseq tutorial directly as input of process (e.g. INDEX(params.transcriptome_file)), means we do not classify the input as a path, so custom input paths fail.
Still many of the examples do not work, which is fine for hypothetical, but would be cooler if they actually process data too. E.g. Blast run Section:6.4.