Chris Wyatt
Chris Wyatt
**Gitpod:** Having nextflow install in `init` section of gitpod doesn't work. We should just package the lot into a container. ask users to login to gitpod the day before. It...
**Setup:** Improve instructions for cloud9 or switch to gitpot. Make it clear that "local" setup is not used in the cloud9 tutorial. **Talk** "embarassingly parrelization" sounds wrong. -> Change on...
I noticed that if you close the session, then it won't let you reopen the environment, try opening the following: https://eu-west-3.console.aws.amazon.com/cloud9/ | IAM User | 195996028523 | user7-22 | Secret123!...
Currently the tower section follows the docs (https://github.com/seqeralabs/nf-training-public/blob/master/asciidocs/tower.adoc), with help showing how to run tower for the first time and basic functions etc. We need to review what we have...
We need a new setup all.sh with correct nextflow version. `## NF version export NXF_VER=20.04.1-edge echo "export NXF_VER=20.04.1-edge" >> ~/.bashrc mkdir -p ~/bin` The above was what we used, which...
The channel, processes and operators sections are pretty much copy and paste from the docs. These sections could be way more interactive, building on the previous sections and be less...
1. Explain what the hello.nf script does first. What we want to produce from this script. 2. Should we have a public version of the training, not a full version....
If we switch to gitpod, singularity may not be possible to demonstrate. I tried to find other repos with singularity. https://community.gitpod.io/t/singularity/5486/5 Looks like we would have to use a virtual...
--- name: New Config about: A new cluster config --- Please follow these steps before submitting your PR: - [ ] If your PR is a work in progress, include...