hifiasm
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chhylp123
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Hello, Is it suitable to run the `purge_dups` pipeline on my assembly obtained with the 0.15.1 version ? I assembled a low heterozygous genome (~1.1/1.2Gb expected size) , which gives...
Hi, I assemble a diploid plant genome with default HiC mode in HIFIasm (0.15.5-r350). The genome size is expected to be 811M (based on flow cytometry). The results look good,...
Hello, This is similar to [issue#69](https://github.com/chhylp123/hifiasm/issues/69) but for me it is unsolved yet. I am running hifiasm v 0.14.2-r315 to assemble ~3.5Gb genome. My hifi fastq files contain 1M reads...
Hi, I am working on a plant species with an estimated genome size of 2.2 Gb and heterozygous rate of 0.5% (estimated by genomesCope based on HiFi data). I ran...
Dear hifiasm team, I'm developing an [nf-core](https://github.com/nf-core/modules) module for hifiasm, and I've tested haplotype phasing with hifiasm using a toy set of PacBio HiFi reads and a small set of...
Dear Authors: Here is my kmer distribution result from the most recent hifiasm v0.14.5 with default paras. I don't know why would this happen. Also, the N50 is not good...
Hi, we have used two different hifiasm versions for assembling male genomes. For chrY, we observed that the more recent version (v0.15.2) distributes the chrY sequences between primary and alternate...
Hi, I am trying to assembly wild barley genome. In my initial run, I used default settings, the run finished. As an input i have used ccs fasta file. However,...
Hi, I want to run hic mode but I don't how to set parameters when I have two HIC libraries. Thanks!
Hello, I have successfully completed the assembly, but now I want to evaluate the quality of the genome assembly. The software I want to use at present is Busco. But...
