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Published 20 hours ago • verified publisher icon chhylp123

with HIC mode

Open linshengnan09 opened this issue 2 years ago • 4 comments

Hi, I want to run hic mode but I don't how to set parameters when I have two HIC libraries. Thanks!

linshengnan09 avatar Jul 07 '21 07:07 linshengnan09

--h1/--h2 is used to feed Hi-C reads for phasing.

chhylp123 avatar Jul 07 '21 12:07 chhylp123

Dear author, I currently have data sets of HIFI and HIC. Is the assembly result of HIC and HIFI input together better than that of HIFI alone? I need the primary output

zuodabin avatar Dec 29 '23 02:12 zuodabin

If you only need the primary assembly, Hi-C+HiFi would be similar to HiFi-only.

chhylp123 avatar Jan 02 '24 13:01 chhylp123

Thank you. I think so, too. But I don't know if there is any difference in the assembly quality of the genome as a result of using the two methods发自我的 iPhone在 2024年1月2日，21:47，chhylp123 @.***> 写道： If you only need the primary assembly, Hi-C+HiFi would be similar to HiFi-only.

—Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you commented.Message ID: @.***>

zuodabin avatar Jan 02 '24 13:01 zuodabin