plot-VCF

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Hi there cccnrc! Very excited to use this package. I have successfully donwloaded it and pointed it to my .vcf file and tried to use the createVCFplot() function. However, I...

lroppolo

Hello! First, thanks for the wonderful and user-friendly program. I just have one question about modifying the y-axis: is there a way to manually adjust (e.g., ylim = c(0,100)) the...

memery5

different assembler/fasta not working

2

Hello, I'm trying to use this tool to visualize differences in variants in yeast strains - specifically Saccharomyces cerevisiae S288C. I tried this code: ``` library(plotVCF) VCF please specify either...

rmormando

Support for CSI indexing

2

Hi Will there be support for CSI indexing? Currently I'm getting errors when I run createVCFplot. It tries to index with TBI and recommends I use CSI indexing. I'm working...

brettChapman

Error with createVCFplot(VCF) function

2

Hi, After a successful plotVCF installation under R-4.2.0, the createVCFplot() function with the example shows next error message: -> loading VCF file ... -> passed VCF file extension: gz ->...

mglgc

Dear, I'm trying to use your tool to visualize Structural variants but I'm working with an other organism than human so I would like to change the reference genome to...

Enorya