Broad Institute
Broad Institute
cromshell
CLI for interacting with Cromwell servers
gatk-sv
A structural variation pipeline for short-read sequencing
pyro-cov
Pyro models of SARS-CoV-2 variants
depmap_omics
What you need to process the Quarterly DepMap-Omics releases from Terra
protigy
Proteomics Toolset for Integrative Data Analysis
cell-health
Predicting Cell Health with Morphological Profiles
lincs-cell-painting
Processed Cell Painting Data for the LINCS Drug Repurposing Project
SpliceAI-lookup
Website for checking SpliceAI and Pangolin scores:
single_cell_portal_core
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
single_cell_portal
Tutorials, workflows, and convenience scripts for Single Cell Portal