Benjamin Buchfink
Benjamin Buchfink
If you use the `--top` option hits are sorted by score instead.
You can use `--top 0`, although if there are several best hits with equal score it will report all of them.
> With `-k 1` is there any other sorting after e-values. For example, if the two top hits have a equal e-values is there anything to break the tie? It...
It's possible, I'll see what I can do but I probably won't have time in the near future. I would recommend to split the query file into chunks and align...
This does not seem out of the ordinary. The nr is a big database, in sensitive mode with only 16 threads it may take this long.
Looks like you already solved the zstd error, but I'm not sure about the linker error. What archlinux version are you using?
The staxid field is not supported by diamond at this time but I will consider the feature request.
I'm not familiar with the internals of the ALP library and why it may fail for certain matrices.
The feature is not supported but I plan to implement it.
@riksub Use `update_blastdb.pl` to download the db in blast format, then `blastdbcmd` to convert it to fasta, then `makedb` with the taxonomy support files as described in the Wiki. Given...