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singular version of staxids command?

Open ewaltari opened this issue 1 year ago • 1 comments

Hello! Per these option details, I was trying to output a singular (top?) taxid and ssciname staxids Unique Subject Taxonomy ID(s), separated by a ’;’ (in numerical order). This field requires setting the --taxonmap parameter for makedb.

When running command-line blast, for example, including either "staxid" or "staxids" will give output. However when running Diamond, I can only get output using "staxids" which runs fine, just with multiple ids. When I try staxid, I get error Error: Invalid output field: staxid

Thanks, Eric

ewaltari avatar May 17 '24 23:05 ewaltari

The staxid field is not supported by diamond at this time but I will consider the feature request.

bbuchfink avatar May 27 '24 11:05 bbuchfink