Benjamin Buchfink
Benjamin Buchfink
FYI the job finished for me after 5 days producing 140 GB of DAA output.
Hi Katie, I ran it using 64 cores on and AMD EPYC system with 2 TB of RAM. That much RAM is not needed however, diamond runs fine with 128...
I can't reproduce the problem using v2.1.4. Could you run this again using the `--log` option and show me the output?
The only thing I noticed about these logs is that your calls with `--mp-init` don't have a block size parameter while the others do, that could be a problem.
The algorithm has no guarantee of selecting the longest sequence. It only aims that the representative covers the members by >80% (or whatever cutoff you set for `--member-cover`). If this...
I don't see why this should happen. Would it be possible to send me the necessary files to reproduce the problem?
> When I just run this, the TaxID of the top hit was 5555 rather than the expected 9999. I tried to follow your procedure, but I got 9999 at...
Either way is fine.
I can reproduce the issue using your files. The reason is still not apparent to me, I'll need some time to track this down.
No, like I said I can reproduce the issue already (on my Linux system).