Jim Balhoff
Jim Balhoff
Just a note - I think we determined that an instance of CcdhString would be an object with a `value` data property pointing to an xsd:string.
A fix has been implemented in linkml; we should test with the next linkml release.
I had a chat with @gaurav; he says that the targets that need this tool should depend on the `install-dev` target. It's not totally clear to me if the distinction...
> I take it you would like to see support for the 'code' represented as a CURIE (e.g. NCIT:C12468) as well as the simple code (e.g. C12468)? Yes, basically a...
@cmungall we need a release of phenopacket reference API before we merge this. It uses 0.0.4-SNAPSHOT.
@cmungall I updated to use the released phenopacket API version. I also had to add junit to the POM files to fix a build problem. I was a bit confused...
@cmungall you mentioned reading a phenopacket in place of existing TSV reading. But the only TSV I can find is `ReadMappingsUtil.readPairwiseMappingsFromTsv` which seems like it's used to read in a...
Actually I think I was wrong—just came across `OWLLoader.loadDataFromTsv`, not sure how I missed that before. I'll add `loadDataFromPhenoPacket`.
Initial implementation here: https://github.com/balhoff/owlsim-v3/commits/phenopacket-reading Need to create some test data.
> What leaves me puzzeled however is that ELK or Pallet in Protégé won't infer that the subclasses of 'alkene oxidative cleavage' are also subclasses of 'oxidative cleavage'. So the...