amazon-genomics-cli
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aws
The [docs](https://aws.github.io/amazon-genomics-cli/docs/concepts/workflows/#manifestjson-structure) and most examples use `optionFileURL` (singular) in the manifest. But [CromwellWESAdapter looks for `optionsFileURL`](https://github.com/aws/amazon-genomics-cli/blob/9f6480dcbd3bd280c822cce960aec0c6aceb7615/packages/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py#L668-L677) (plural). Also, if we [search this repo](https://github.com/aws/amazon-genomics-cli/search?q=optionsFileURL) for `optionsFileURL` (plural), there are a few...
As per the [walkthough](https://aws.github.io/amazon-genomics-cli/docs/tutorials/walkthrough/#accessing-workflow-logs), the command `agc logs workflow ` should print out the logs for individual jobs. When using snakemake, I tried to look at the logs for individual...
Adding the option to provide cpu count and memory size for the engine via the yaml project file. Issue: https://github.com/aws/amazon-genomics-cli/issues/204 **Description of Changes** I added the ability to change the...
[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** [//]: # (Please describe the behavior that you are seeing...
[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** I would like the `--awsProfile` to change to `--profile` to match...
[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** [//]: # (A short description of the feature you are proposing.)...
[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** [//]: # (Please describe the behavior that you are seeing...
[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** Running a Snakemake workflow [with directories as outputs](https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#directories-as-outputs) makes the...
[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** Running a Snakemake workflow [with temporary output files](https://snakemake.readthedocs.io/en/stable/tutorial/short.html#temporary-files) makes the...
[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** [//]: # Multiple customer requests for FSx Lustre file system integrated...
