amazon-genomics-cli
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[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** I have a use case where I want to submit pipeline...
[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** `agc workflow run` will zip whatever is at the `sourceURL`...
Hi, I recently started using AGC. I tried GATK's cram-to-bam and my custom workflow but both workflows got stuck in the Running stage forever until I terminated them. I checked...
THIS IS A DRAFT UNTIL THE AGC TARBALL IS UPDATED TO CONTAIN AN IMDSv2-supported VERSION of amazon-ebs-autoscale. **Description of Changes** Add metadataOptions to require IMDSv2. This is a security best...
[//]: # (Please do not include your AWS account or credentials as part of the bug request.) When running RNASeq, Sarek, or FetchNGS pipelines as per the AWS tutorial [Analyzing...
[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** Following the guide for [installation](https://aws.github.io/amazon-genomics-cli/docs/getting-started/installation/), downloading the zip via `aws...
Issue #, if available: **Description of Changes** [//]: # (A description of the change that you made and the new user experience that it creates) When trying to get the...
Hi, we've been trying to run the latest versions of some nf-core pipeline (e.g. nf-core/methylseq) which require Nextflow >=22.10.01, but AGC doesn't seem to work with Nextflow > 22.04.03. Is...
[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** [//]: # (A short description of the feature you are proposing.)...
**Description** Chatting with an Amazon engineer via a support case, he recommended that for my workflow it would be most cost-efficient to use Elastic Throughput. For context, my workflow is...
