amazon-genomics-cli

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Customer request for workflow restart using Cromwell if docker images are stored in ECR

1

[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** [//]: # Customer request for workflow restart using Cromwell if docker...

miachamp

Consistently Tag Engine Batch jobs

1

[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** * Engine tasks should be tagged with standard AGC tags. *...

markjschreiber

ARM support for install.sh

4

[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** attempted to install on t4g instance type and ran into an...

bollig

Store Nextflow head process generated files

5

**Description** Nextflow has options to generate timeline reports and dags on the completion of a workflow. They are default written to the directory the engine is running. I couldn't find...

MrMarkW

feat: allows skipping of specific nextflow files from being cached

1

Issue #, if available: **Description of Changes** [//]: # (A description of the change that you made and the new user experience that it creates) Running a nextflow workflow generates...

OhCloud

only specific instance types and not instance families can be listed in `context.instanceTypes`

2

[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** [//]: # (Please describe the behavior that you are seeing...

wleepang

I am trying to use AGC in conjunction with the nf-core/rnaseq workflow, specifically in the challenging case of the axolotl (Ambystoma mexicanum) genome, which is roughly ten times larger than...

jhgraber

As noted here: https://github.com/aws/amazon-genomics-cli/blob/2b93a2cb843bce2945538d06f487886b7efe6707/packages/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py#L249-L250 AGC needs to see a `|` and then an AWS Batch job ID at the end of a task name reported from a WES server it...

adamnovak

Add account activate flag for using private API Gateway

1

[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** Some users want to restrict API Gateway endpoints for all contexts...

markjschreiber

Add a `--no-cache` flag for `agc workflow run`

2

[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** A flag that will indicate that the run should not use...

markjschreiber