Examples for providing workflow inputs

[MrOlm]

Description

Add example commands to the "nf-core-project" examples here - https://github.com/aws/amazon-genomics-cli/tree/main/examples/nf-core-project

Use Case

There are no provided examples in the documentation or walk through on how to pass through command line input variables with the nextflow engine. The examples provided here: https://github.com/aws/amazon-genomics-cli/tree/main/examples/nf-core-project seem to use command line inputs, but there no example of how they're provided. The documentation on adding inputs (https://aws.github.io/amazon-genomics-cli/docs/tutorials/walkthrough/#using-workflow-inputs ) has no examples for nextflow.

Proposed Solution

Add example commands to the "nf-core-project" examples here - https://github.com/aws/amazon-genomics-cli/tree/main/examples/nf-core-project . For example, agc workflow run atacseq --context ctx1 --inputsFile inputs.json

Other information

Thank you!