amazon-genomics-cli
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logs not displaying for individual snakemake jobs
As per the walkthough, the command agc logs workflow <workflow_name>
should print out the logs for individual jobs.
When using snakemake, I tried to look at the logs for individual jobs with agc logs workflow <workflow_name>
, and the job ids are printed out, but the actual logs aren't printed out, and I get the following error message.
RunId: fd705e15-079c-4e35-9ce8-8318c4a393f5
State: COMPLETE
Tasks:
Name JobId StartTime StopTime ExitCode
snakejob_select_by_country_10_sh29b749bb-a07a-4bde-92e4-573127257538 2022-06-07 15:43:04.81 +0000 UTC 2022-06-07 15:43:07.745 +0000 UTC 0
# not showing all the other jobs
2022-06-07T17:05:46Z ✘ Could not retrieve standard output from snakemakeSnakemakeEngin-0e41ee2854dcd20/default/c8f1cd8a1e4448f48627fda823da57b8: 404 Not Found
This happened for multiple workflows, including the demo example.
Steps to reproduce:
Using the example workflow in demo-snakemake-project
agc context deploy onDemandContext
agc workflow run countries
## wait for workflow start running
agc logs workflow countries
Operating System: AGC Version: 1.5 Was AGC setup with a custom bucket: No Was AGC setup with a custom VPC: No