Anton Korobeynikov comments

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                                            Anton Korobeynikov

== Error == system call for: "['/srv/conda/envs/de_novo_example/share/spades-3.11.1-4/bin/spades', '/home/jovyan/genomics_de_novo_temp/working_dir/spades_default_assembly/K21/configs/config.info']" finished abnormally, err code: -9

It seems to be a log from your laptop, not the server you're running SPAdes on

== Error == system call for: "['/srv/conda/envs/de_novo_example/share/spades-3.11.1-4/bin/spades', '/home/jovyan/genomics_de_novo_temp/working_dir/spades_default_assembly/K21/configs/config.info']" finished abnormally, err code: -9

Your server is running Linux obviously. I would suggest you to ask your system administrator

Spades-hammer stuck on reverse reads

Yes, this is a known problem with CQF module. There is no workaround yet...

Some issues with running SPAdes

Hello Your SPAdes job was killed. Likely more information could be found in your system log. You can restart your SPAdes job from the last checkpoint using `--continue` option. Running...

Spades is printing errors to stdout

Thanks for the suggestion. We will check whether this could be fixed easily for the next SPAdes versions

SPAdes 3.13.1 error code -11

How much free RAM is available for your SPAdes job?

SPAdes 3.13.1 error code -11

This looks a bit suspicious. Does the problem reproduce if you'd rerun SPAdes via --continue option?

SPAdes 3.13.1 error code -11

@sluxlerch Are you sure this amount of *free* RAM is available for your SPAdes job?

Support python 3.10

@olga24912 Will you please check the fix?

Error 20

Hello This really looks like an I/O problem on your end. Can you try to move SPAdes output dir to some other volume / disk?