Anton Korobeynikov
Anton Korobeynikov
Hello Thank you for your interest in SPAdes. Well, looks like bwa crashed while aligning your reads. Does the problem reproduce if you're restart SPAdes via --continue option
If your assembly is larger than 2Gb, then the error is likely. It will be fixed in the next SPAdes release. The only workaround is not to use --careful
Please kindly provide us spades.log file as your were instructed in the error message
It is likely a problem with memory mapped files on ` /path1/`.
Hello This looks like an I/O issue on `/gscmnt/`. What is the file system there?
Well, it's like an issue with GPFS, we saw lots of such problems in the past...
You are correct that it is often not possible to obtain full-length 16S assemblies from metagenomes. There are many reasons for this, however, all of them can be reduced to...
@xphab Please do not hijack other issues and open a new one. Your case is completely different and is likely caused by an I/O problem with disk storage on your...
Hello Your SPAdes job was killed. Likely more information could be found in the system log.
I was talking about system log, not spades.log. You might want to ask your system administrator