Anton Korobeynikov
Anton Korobeynikov
@davidbio The problem is: it was our fault to show these "error codes". In fact they do mean nothing, it's just the return code provided by the system when the...
How have you compiled SPAdes?
Could you please post the build log as well? All the files are in the project configs directory and therefore no explicit path adjustment is necessary at all.
Please reopen if there is still an issue here.
So, we still need to full build logs.
> I expected to solve this issue by compiling the source code (v3.13.1.tar.gz), but the compilation fails with a puzzling error 2. The error is: ``` /ceph/users/pgonzales/.conda/envs/testForNext/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: cannot find -lz...
Dear Steven, Thank you for your interest in SPAdes. You can correct the paths to reads in the `input_dataset.yaml` file. However, this is the scenario we are intentionally do not...
And... you've correctly outlined the next issue. If paths are different, then you're out of luck. You'd need to edit more configuration files to ensure that all intermediate results are...
This may or may not work depending where the scratch dir is :)
Well, if your reads are only 2x then you're out of luck with almost any method. You could try to scaffold though.