Alexander Rose
Alexander Rose
Or maybe update gpu drivers
does `nglStage.viewer.renderer.setClearColor( 0xffffff, 0.01);` work?
@dsehnal care to take a look a this?
That is expected, we only show bond orders if it is included in the file. We do not attempt to calculate/derive the bond order from geometry/element/connectivity. If you know a...
> I think this method would be good. what method are you referring?
> https://www.daylight.com/meetings/mug01/Sayle/m4xbondage.html Thank you. The relevant part seems to be in section 9 of that document. This can in principle be done. After inter and intra bonds are calculated (https://github.com/molstar/molstar/tree/master/src/mol-model/structure/structure/unit/bonds)...
No, there is not. You could try adding it to the structure parsers as an option and wrap the `calculateBonds(s)` calls in an if statements.
Sorry @kiraacorsac, that is a shortcoming in NGL. We addressed it in our new project Mol* (molstar.org). There you can render individual residues as cartoon and multiple cartoon representations will...
Yeah, you are right @dsehnal, the issue is https://github.com/molstar/molstar/blob/4b9009216b7898e5ed5a71b5dec6fe226493fff3/src/mol-model/structure/model/model.ts#L246-L278 I suppose we need to do this per chain to handle these mixed entries where some chain are coarse grained and...
Sorry @kiraacorsac, that is a shortcoming in NGL. We addressed it in our new project Mol* (molstar.org).