Alexander Rose

Use Protonation Variants Companion Dictionary

4

Make use of the Protonation Variants Companion Dictionary (https://www.wwpdb.org/data/ccd) in addition to the Chemical Component Dictionary when assigning bonds. Would help with some of the entries in the issue https://github.com/rcsb/mmtf/issues/19

Add distance-based selections

5

For example "within( 3, 12:A )" to select all atoms with 3 angstrom of residue number 12 in chain A. Depends on fast distance calculations (#76).

- Expose inter-bonds compute params in structure - Improve performance of inter/intra-bonds compute

TODOs - needs more testing - rethink ``sceneRadiusFactor``, maybe also add an option for a fixed radius - find better skybox example DONE - Add ``fov`` (Field of View) Canvas3D...

Supporting depth peeling as an additional option to handle transparency is helpful to avoid issues (e.g. #497, #165) from wboit and simple blending at the expense of speed. There is...

Server documentation: Replace Swagger with ReDoc

1

ReDoc npm package: https://www.npmjs.com/package/redoc Requires changes to https://github.com/molstar/molstar/tree/master/src/servers/common as a starting point.

Documentation Topics

17

Please, feel free to suggest other topics or pick one to work on. This is for the library docs created in https://github.com/molstar/docs (available at https://molstar.org/docs/). - [ ] How to...

Keep focus on text/number inputs while "auto apply" is on

2

In the UI, when changing text/number input parameters of controls with "auto-apply" on the focus gets lots which makes editing text or numbers with more than one character very annoying.

Currently the measurement plane is a rectangle defined by the 2 smaller principal axes. Add options to show a disc/circle. This can use code from the membrane orientation visual.

Some issues with test config last time I tried. Some infos https://github.com/node-fetch/node-fetch/issues/1289