Andrey Prjibelski

Dear @Lafmas I haven't seen the graphvis warning before. The one about single-end can be ignored, it should not affect the run. Conda is installed, correct? Best Andrey

Dear @Lafmas As far as I understand this warning does not affect the run, right? It sill completes despite the warning? Best Andrey

I update the code, the warning should not appear anymore. Best Andrey

Dear @Lafmas At some point something changed in Nextflow and automatic conda installation broke. Shouldbe fixed now, could you update and try again? Best Andrey

Dear @Lafmas Looks like a conda problem - the environment was not created and it does not even tell what the error is. Could you try running the same command...

Dear @fairquestion I will improve documentation, it's not clearly written. Unfortunately, the main developer left our lab some time ago. My experiments led me to conclusion that YAML support is...

Dear @mariamadrid19 >What might be my problem? I am certain I have both BUSCO and GeneMark installed in my server. Thanks a lot! Do you have these tools in `$PATH`?...

Dear @pguarnizob Seems like something is wrong with GMAP, the error log states: ``` Signal received: SIGSEGV Calling Access_emergency_cleanup Problem sequence: R7827508 (117 bp) ``` I see your current gmap...

Dear @ReemaSingh Could you please share rnaQUAST.log, GeneMarkS_T.out.log and GeneMarkS_T.err.log? I suppose these files may contain more information about the error. Best Andrey

Dear @ReemaSingh Looks odd, the GeneMark log simply says: ``` system call done prediction, iteration: 1 /home/reemas/SOFT/GeneMarkST/gmhmmp -p 0 sequence -m itr_1.mod -o itr_1.lst -r Error on last system call,...