gmap fail to align assembly to a reference

[pguarnizob]

Hi, I have an issue in the gmap aligning step while using a reference genome. I attach some useful .logs.

rnaQUAST.log gmap.transabyss_cdhit.err.log gmap_build.err.log

The weird thing is that I could run rnaQUAST properly on other assemblies such as trinity or spades but not the "transabyss-final.fa" (from transabyss) nor the "transabyss-cdhit.fasta" (from transabyss+cdhit pipeline).

Hope some help, thank you in advance,

Best