Andrey Prjibelski

icon indicating an email [email protected]

icon company University of Helsinki icon location Helsinki, Finland icon location PhD, researcher at University of Helsinki

Results 4 issues of Andrey Prjibelski

Scaffold paths with gaps and non-adjacent edges

Hi! Is it possible to add support for scaffold paths that contain gaps? E.g. SPAdes outputs .paths files in the following format: NODE_1_length_237713_cov_242.866931 15366-; 13368-,15368-,13368-,14744+; 15696+,13092-,15690+,13092-; 15694+ where semicolon corresponds...

Docs

Refine docs using mkdocs, restructure large user manual

New visualization stuff

Paired information is lost when k-mer mapper is turned off

### Description of bug 1. Compared to the main branch, E. coli TruSeq 100x dataset looses the longest contig. main: NODE_1_length_405507_cov_64.322436 (405507 bp) try-no-mapper NODE_1_length_361537_cov_63.875850 (361537 bp) See alignment viewer...

enhancement
not a bug