Andrey Prjibelski
Andrey Prjibelski
Dear @asan-emirsaleh Sorry for such a long response, rnaQUAST is now only occasionally maintained as some of authors left the lab. rnaQUAST uses gmap to map contigs to the genome,...
Dear @kalavattam Thank you for your feedback! If you provide reads, rnaQUAST maps them back to the assembly, which may take a lot of time, days in some cases. I...
Dear @kalavattam I thnk the log remain unchanged since it waits for the STAR aligner to finish. Do you see any STAR logs or SAM files in the output folder?...
@asan-emirsaleh Answered in another thread. In brief, unfortunately the problem remains there as rnaQUAST is not in the active development. I suggest not to provide reads to rnaQUAST and use...
Dear @r78v10a07 Sorry for the late reply, was out of the office. I might have seen this error, but I'm not sure I know how to reproduce that. For now...
@r78v10a07 I found the error in pylab imports, thanks a lot for the report! The issue should be now fixed in https://github.com/ablab/rnaquast/releases/tag/v.2.2.4 Best Andrey
Hi @sumitra20 rnaQUAST was initially designed as a tool for testing de novo assemblers with the use of reference genome and annotation. So if you don't have them, resulting report...
Dear @maronem This is strange. What happens if you simply run `python3` and run `import pysam`? Best Andrey
Please, reopen if the issue is still there.
Dear @baishengjun Sorry for the delayed response and thanks for the feedback. At the moment IsoQuant does not exploit dRNA properties fully. Currently, when stranded data is provided only minimap...