Andrey Prjibelski

Dear @seungbeom-han At the moment, I'd say so. Meanwhile I'll do some experiments to figure out whether I can fix it quickly. Thanks for bringing my attention to this. Best...

Dear @linalu1121 How do you measure CAGE support? Could you send me some logs from your runs, both individual and joint? Best Andrey

@linalu1121 Yes, to get a single GTF it makes sense to provide all BAMs together, so everything is correct in this part. It doesn't really matter that the log says...

New [IsoQuant 3.5 ](https://github.com/ablab/IsoQuant/releases/tag/v3.5.0)should be far more optimal in terms of RAM consumption, especially when using multiple samples. I'll close this issue for now, please, re-open if needed.

Dear @rsalz Thanks for the suggestion, I'll try to add this classification in one of the following releases. Best Andrey

Dear @HabiBBBaghirov Thanks for the feedback and sorry for the delayed response! Could you send me your command line (or the entire log) as well as a few lines from...

Dear @bpuzek Could you send me the log file and files in the list of files you got in your output folder? Best Andrey

@bpuzek Thanks! Could you send me also first few lines of OUT.transcript_grouped_counts.tsv? Everything looks intact, the output should be there... Best Andrey

@bpuzek Sorry, this is quite puzzling.I tried to run some of my data providing a similar CSV file with --read_group, everything works fine... Would it be possible to send me...

Dear @bpuzek >Each columns corresponds to a group, in contrast to what README says: "In the number of groups exceeds 10, file will contain 3 columns". Did you ever do...