Andreas Wilm

Release tarball 0.3.0 doesn't compile

2

Downloaded the release (from github; i.e. not repo cloned) and tried to compile, but certain headers are missing (see below). Make modules doesn't work either because the release is not...

Feature request: New option --exclude for indexsplit

1

Hi Brent, I would like to propose a new option for `goleft indexsplit` (and would have implemented it myself if my Go was any good): `--exclude` to be able to...

Automatically delete files marked as temp as soon as not needed anymore

54

To reduce the footprint of larger workflows it's very useful if temporary files (which are marked as such) could be **automatically** deleted once they are not used anymore. Yes, this...

vawk ignoring PYTHON set in bin/speedseq.config

2

Hi, bin/vawk depends on Python2. I guess it should reuse the interpreter set in bin/speedseq.config. In my case I have Python3 installed as default and a Python 2.7 interpreter set...

Changed is_block_dev_partition() to allow raid devices

5

This fixed #264 for me.

See title

bam recab: parallel processing

4

Hello there and thanks for bamUtil. I have an enhancement request: when using bamUtil for massaging of BAM files one real bottleneck seems to be the recalibration step (`bam recab`),...

- either based on number of tests or number of raw variants - distinguish between snps and indels