Andreas Wilm

See https://github.com/CSB5/lofreq/pull/107/files

Fix simple cases of invalid cigars

1

- i.e. leading/trailing indel before/after matches - See e.g. 1I99M for EAS20_8_6_87_382_926 in spike-in.bam - first classify problems in real data (spike-in.bam was massaged with bamsurgeon)

useful for testing, but will need sorting of lofreq3 and samtools output

Hi @lh3, many thanks for developing Miniprot! I was wondering if Miniprot could also be (ab)used to search for very short sequences/peptides (say, even down to 8AA) in large genomes....

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