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Published 20 hours ago • verified publisher icon hall-lab

vawk ignoring PYTHON set in bin/speedseq.config

Open andreas-wilm opened this issue 7 years ago • 2 comments

Hi,

bin/vawk depends on Python2. I guess it should reuse the interpreter set in bin/speedseq.config. In my case I have Python3 installed as default and a Python 2.7 interpreter set in bin/speedseq.config. When running Speedseq you get an error like the following:

vawk", line 129
print 'Error: format should be S$[ID]$[FMT]'

Correcting the shebang fixes the problem.

Andreas

(git commit 494f8fc)

Andreas

andreas-wilm avatar Aug 25 '16 09:08 andreas-wilm

helpful[up]

snailQH avatar Mar 26 '19 02:03 snailQH

How to solve the problem?

qindan2008 avatar Jan 09 '20 07:01 qindan2008