Andreas Wilm
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45
issues of
Andreas Wilm
Error: unhandled exception: index 816394 not in 0 .. 816393 [IndexDefect] reffa=../../refs/NC_000912_Mpneumoniae.fasta fq1=../../mycoplasma_diaz_2017_SRR3924583/SRR3924583_1.fastq.gz fq2=../../mycoplasma_diaz_2017_SRR3924583/SRR3924583_2.fastq.gz obam=SRR3924583.lf3.bam; bwa mem -t 8 $reffa $fq1 $fq2 | samtools fixmate - - | lofreq viterbi...
bug
Might still be needed for debugging should hence be an option
enhancement