Andreas Wilm

I thought after this patch iteration should be as easy as continuously calling querier.send_query(query) and updating query.start if len(querier.articles) == query.num_results and break otherwise. But that somehow lists results repeatedly...

https://github.com/projectatomic/container-storage-setup/pull/265 fixed this for me.

See also implementation in https://github.com/kampka/yconf

Maybe if you sketched out the overall procedure someone could volunteer (including me)? A couple of pointer to resp. functions and how collected results per region/chromosome could be merged into...

Wow! Just wow. As soon as this becomes a pressing issue for us, I'll give this a go! Should hopefully be easy with such detailed info.

Hello, I experience the same issue using the following three options: 1. latest Github commit (`devtools::install_github("GoekeLab/bambu")`) 1. latest release (`install.packages('bambu-3.2.4.tar.gz')`) and 1. Bioconductor (`BiocManager::install("bambu")`) Is there another way to address...

tests/call_samples: - `lofreq call -f cov.fa -b cov.bam --mincov 4` should return 0 - `lofreq call -f cov.fa -b cov.bam --maxcov 1` should return 2

Addressed in 8b7ff89aafdbd2917c9a81f0701d3c48b30aaa52

Moved SB into its own issue

Possibly just BAMsurgeon artefacts