Alistair Miles
Alistair Miles
Yes, as far as I can make out there is no explicit support in the vcflib C++ API for writing a VCF. If ekg adds this upstream I'd be happy...
Apologies I haven't had a chance to look into this yet. One thing I really need here is a small sample dataset to use for testing. If you had a...
Hi there, the error suggests that the Cython module did not compile or get installed for some reason. Could you say how you tried to install pysamstats? On Tue, 13...
Thanks @owainkenwayucl, sorry for the slow response. I need to update pysamstats anyway to check compatibility with recent pysam versions, have been waiting for the pysam install issues to settle...
Thanks Richard. On Friday, October 7, 2016, Richard Pearson [email protected] wrote: > If anyone wants a quick workaround to get pysamstats to install with pysam > 0.9.1.4, clone from github,...
Hi Andrew, I'm not sure I understand what you mean. Could you elaborate? On Wednesday, January 18, 2017, Andrew Stewart wrote: > Is it currently possible in pysamstats to generate...
Hi Andrew, no there is no option currently to generate a consensus sequence from variation stats. The variation stats count the total number of reads supporting a mismatch, indel etc....
Hi Andrew, Apologies, I am being dim and still not getting it. Could you walk me through a complete example? E.g., say a site has reference nucleotide "A", in the...
Thanks for letting me know, very cool!
Thanks Dario, I'm sure we can do something about this.