Alistair Miles
Alistair Miles
Will implement binned cigar stats rather than compare to reference sequence (should be faster) and add NM (edit distance).
Looks like accessing aux tags efficiently is not straightforward, will drop NM for now and just count cigar.
Hi @martina811, short answer is I don't know for sure. If you are using the pileup-based statistics then these are all driven by the [pysam pileup() method](https://pysam.readthedocs.io/en/latest/api.html#pysam.AlignmentFile.pileup). I *think* that...
cc @hardingnj. Actually wondering if you'd like to take this one all the way through, i.e., be the release manager for this release? You will have done most of the...
Great, thanks Nick, I'll take a look asap.
I went ahead with a 1.1 release, ended up moving on to 1.1.2 because I screwed up the packaging a couple of times. Should all be good now.
Hi Nikolas, I haven't seen specifically this error before, but I think things like this can happen if there are multiple version of pysam installed on a computer, and there...
Thanks, looking into it.
Thanks @pontikos but may be a different problem (with same error message), looks like pysam 0.8.4 moved a couple of things, am just testing a new pysamstats release which should...
Hi @luwening, I've released a new version 0.24.0 which should be compatible with pysam 0.8.4. Could you make sure you have pysam 0.8.4 installed, then try installing pysamstats? Thanks.